77.
Kirstahler P, Bjerrum SS, Friis-Møller A, la Cour M, Aarestrup FM, Westh H, Pamp SJ.
Genomics-Based
Identification of Microorganisms in Human Ocular Body Fluid. Nature Research Journal. 2018 Mar
7;8(1):4126. doi: 10.1038/s41598-018-22416-4.
Link to publication...
76.
Petersen, TN., Lukjancenko, O., Thomsen, MCF., Sperotto, MM., Lund, O., Aarestrup, FM.,
Sicheritz-Pontén, T. MGmapper: Reference based mapping and taxonomy annotation of metagenomics
sequence reads. PLoS One. 2017. Link to
publication...
75.
Berg, E. S; Wester, A. L; Ahrenfeldt, J; Mo, SS; Slettemeås, JS; Steinbakk, M; Samuelsen, Ø;
Grude,
N; Simonsen, GS; Løhr, IH; Jørgensen, SB; Tofteland, S; Lund, O; Dahle, UR; Sunde, M. Norwegian
patients and retail chicken meat share cephalosporin-resistant Escherichia coli and
IncK/blaCMY-2
resistance plasmids. 2017. Clinical Microbiology and Infection.Infection (ISSN: 1198-743X) (DOI:
http://dx.doi.org/10.1016/j.cmi.2016.12.035) E-pub ahead of print.
74.
Ahrenfeldt, J; Skaarup, C; Hasman, H; Pedersen, AG; Aarestrup, FM; Lund, O. Bacterial whole
genome-based phylogeny: construction of a new benchmarking dataset and assessment of some
existing
methods. 2017. BMC Genomics.
Link to publication...
73.
Jurtz VI, Villarroel J, Lund O, Voldby Larsen M, Nielsen. MetaPhinder - Identifying
Bacteriophage
Sequences in Metagenomic Data Sets,PLoS One. 2016; 11(9): e0163111..
Link to publication...
72.
Clausen, PTL, Zankari, E, Aarestrup, FM. Benchmarking of methods for identification of
antimicrobial
resistance genes in bacterial whole genome data. Journal of antimicrobial chemotherapy; 71(9):
2484-2488.
Link to publication...
71.
Kumburu HH, Sonda T, Mmbaga BT, Alifrangis M, Lund O, Kibiki G, Aarestrup FM. Patterns of
infections, aetiological agents, and antimicrobial resistance at a tertiary care hospital in
northern Tanzania. Trop Med Int Health. 2017 Jan 10. doi: 10.1111/tmi.12836..
Link to publication...
70.
Berg ES, Wester AL, Ahrenfeldt J, Mo SS, Slettemeås JS, Steinbakk M, Samuelsen Ø, Grude N,
Simonsen
GS, Løhr IH, Jørgensen SB, Tofteland S, Lund O, Dahle UR, Sunde M. Norwegian patients and retail
chicken meat share cephalosporin-resistant Escherichia coli and IncK/blaCMY-2 resistance
plasmids.
Clin Microbiol Infect. 2017 Jan 7. pii: S1198-743X(17)30006-X.
Link to publication...
69.
Joensen KG, Engsbro AL, Lukjancenko O, Kaas RS, Lund O, Westh H, Aarestrup FM. Evaluating
next-generation sequencing for direct clinical diagnostics in diarrhoeal disease. Eur J Clin
Microbiol Infect Dis. 2017 Mar 11. doi: 10.1007/s10096-017-2947-2. [Epub ahead of print].
Link to publication...
68.
Espinoza-Valles I, Vora GJ, Lin B, Leekitcharoenphon P, González-Castillo A, Ussery D, Høj L,
Gomez-Gil B. Unique and conserved genome regions in Vibrio harveyi and related species in
comparison
with the shrimp pathogen Vibrio harveyi CAIM 1792. Microbiology. 2015 Sep;161(9):1762-79.
Link to publication...
67.
Leekitcharoenphon P, Pamp SJ, Andresen LO, Aarestrup FM, Comparative genomics of toxigenic and
non-toxigenic Staphylococcus hyicus, Veterinary Microbiology, Volume 185, 15 March 2016, Pages
34-40, ISSN 0378-1135.
Link to publication...
66.
Leekitcharoenphon P, Hendriksen RS, Le Hello S, Weill F-X, Baggesen DL, Jun S-R, Ussery DW, Lund
O,
Crook DW, Wilson DJ, Aarestrup FM. Global genomic epidemiology of Salmonella enterica serovar
Typhimurium DT104. Appl Environ Microbiol 82:000 - 000. February 2016.
doi:10.1128/AEM.03821-15.
Link to publication...
65.
Leekitcharoenphon P, Raufu I, Nielsen MT, Rosenqvist Lund BS, Ameh JA, Ambali AG, Sørensen G, Le
Hello S, Aarestrup FM, Hendriksen RS. Investigating Salmonella Eko from Various Sources in
Nigeria
by Whole Genome Sequencing to Identify the Source of Human Infections. 2016. PLoS One. 2016.
11(5):e0156212.
Link to publication...
64.
Henri C, Félix B, Guillier L, Leekitcharoenphon P, Michelon D, Mariet JF, Aarestrup FM, Mistou
MY,
Hendriksen RS, Roussel S. Population genetic structure of Listeria monocytogenes strains
determined
by pulsed-field gel electrophoresis and multilocus sequence typing. Appl Environ Microbiol.
2016.
pii: AEM.00583-16.
Link to publication...
63.
Roer L, Hendriksen RS, Leekitcharoenphon P, Lukjancenko O, Kaas RS, Hasman H, Aarestrup FM. Is
the
Evolution of Salmonella enterica subsp. enterica Linked to Restriction- Modification Systems?.
mSystems. 2016. DOI: 10.1128/mSystems.00009-16.
Link to publication...
62.
Siriphap A, Leekitcharoenphon P, Kaas RS, Theethakaew C, Aarestrup FM, Sutheinkul O, Hendriksen
RS.
Characterization and Genetic Variation of Vibrio cholerae Isolated from Clinical and
Environmental
Sources in Thailand. PLoS One. 2017 Jan 19;12(1):e0169324
Link to publication...
61.
Cavaco LM, Bernal JF, Zankari E, Léon M, Hendriksen RS, Perez-Gutierrez E, Aarestrup FM,
Donado-Godoy P. Detection of linezolid resistance due to the optrA gene in Enterococcus faecalis
from poultry meat from the American continent (Colombia). J Antimicrob Chemother. 2016 Dec 20.
pii:
dkw490. doi: 10.1093/jac/dkw490.
Link to publication...
60.
Ahrenfeldt J, Skaarup C, Hasman H, Pedersen AG, Aarestrup FM, Lund O. Bacterial whole
genome-based
phylogeny: construction of a new benchmarking dataset and assessment of some existing methods.
BMC
Genomics. 2017 Jan 5;18(1):19. doi: 10.1186/s12864-016-3407-6.
Link to publication...
59.
Thomsen MCF, Ahrenfeldt J, Cisneros JLB, Jurtz V, Larsen MV, Hasman H, Aarestrup FM, Lund O. A
Bacterial Analysis Platform: An Integrated System for Analysing Bacterial Whole Genome
Sequencing
Data for Clinical Diagnostics and Surveillance. PLoS ONE 2016, 11(6): e0157718.
doi:10.1371/journal.pone.0157718 Link to
publication...
58.
Hasman H, Hammerum AM, Hansen F, Hendriksen RS, Olesen B, Agersø Y, Zankari E, Leekitcharoenphon
P,
Stegger M, Kaas RS, Cavaco LM, Hansen DS, Aarestrup FM, Skov RL. Detection of mcr-1 encoding
plasmid-mediated colistin-resistant Escherichia coli isolates from human bloodstream infection
and
imported chicken meat, Denmark 2015. Euro Surveill. 2015 Dec 10;20(49). doi:
10.2807/1560-7917.ES.2015.20.49.30085. PubMed PMID: 26676364
Read more...
57.
Franco A, Leekitcharoenphon P, Feltrin F, Alba P, Cordaro G, Iurescia M, Tolli R, D'Incau M,
Staffolani M, Di Giannatale E, Hendriksen RS, Battisti A. Emergence of a Clonal Lineage of
Multidrug-Resistant ESBL-Producing Salmonella Infantis Transmitted from Broilers and Broiler
Meat to
Humans in Italy between 2011 and
2014. PLoS One. 2015 Dec 30;10(12):e0144802. doi: 10.1371/journal.pone.0144802. eCollection 2015
Read more...
56.
Saputra D, Rasmussen S, Larsen MV, Haddad N, Sperotto MM, Aarestrup FM, Lund O, Sicheritz-Pontén
T.
Reads2Type: a web application for rapid microbial taxonomy identification. BMC Bioinformatics.
2015
Nov 25;16(1):398. doi: 10.1186/s12859-015-0829-0
Read more...
55.
Zschach H, Joensen KG, Lindhard B, Lund O, Goderdzishvili M, Chkonia I, Jgenti G, Kvatadze N,
Alavidze Z, Kutter EM, Hasman H, Larsen MV. What Can We Learn from a Metagenomic Analysis of a
Georgian Bacteriophage Cocktail?Viruses 2015, 7(12), 6570-6589; doi:10.3390/v7122958 Read more...
54.
Jensen MB, Schumacher H, Hasman H, Aarestrup FM. [Pasteurella multocida septicaemia and
pneumonia
after chemotherapy in a patient who had no known contact with animals.]. Ugeskr Laeger. 2014 Dec
15;176(25A). pii: V01130015
Read more...
53.
Joensen KG, Tetzschner AM, Iguchi A, Aarestrup FM, Scheutz F. Rapid and Easy In Silico
Serotyping of
Escherichia coli Isolates by Use of Whole-Genome Sequencing Data. J Clin Microbiol. 2015
Aug;53(8):2410-26. doi: 10.1128/JCM.00008-15. Epub 2015 May 13. PubMed PMID: 25972421; PubMed
Central PMCID: PMC4508402.
Read more...
52.
Pedersen K, Soerensen G, Loefstroem C, Leekitcharoenphon P, Nielsen B, Wingstrand A, Aarestrup
FM,
Hendriksen RS, Baggesen DL. Reappearance of Salmonella serovar Choleraesuis var. Kunzendorf in
Danish pig herds. Vet Microbiol. 2015 Apr 17;176(3-4):282-91. doi: 10.1016/j.vetmic.2015.01.004.
Epub 2015 Jan 27. PubMed PMID: 25703158
Read more...
51.
Antilles N, Garcia-Migura L, Joensen KG, Leekitcharoenphon P, Aarestrup FM, Cerdà-Cuéllar M,
Hendriksen RS. Audouin's gull, a potential vehicle of an extended spectrum ß-lactamase producing
Salmonella Agona. FEMS Microbiol Lett. 2015 Jan;362(3):1-4. doi: 10.1093/femsle/fnu039. Epub
2014
Dec 4. PubMed PMID: 25673651
Read more...
50.
Wang M, Borris L, Aarestrup FM, Hasman H. Identification of a Pseudomonas aeruginosa
co-producing
NDM-1, VIM-5 and VIM-6 metallo-ß-lactamases in Denmark using whole-genome sequencing. Int J
Antimicrob Agents. 45:324-5. Marts 2015.
Read more...
49.
Spoor L. E., P. R. McAdam, L. A. Weinert, A. Rambaut, H. Hasman, F. M. Aarestrup, A. M. Kearns,
A.
R. Larsen, R. L. Skov and J. R. Fitzgerald. Livestock origin for a human pandemic clone of
community-associated methicillin-resistant Staphylococcus aureus. MBio. 13;4, August 2013. Read more...
48.
Qin Y, Hasman H, Aarestrup FM, Alwathnani HA, Rensing C. Genome Sequences of Three Highly
Copper-Resistant Salmonella enterica subsp. I Serovar Typhimurium Strains Isolated from Pigs in
Denmark. Genome Announc December 2014.
Read more...
47.
Luthje F. L., Hasman H., Aarestrup FM, Alwathnani HA, Rensing C. Genome Sequences of Two
Copper-Resistant Escherichia coli Strains Isolated from Copper-Fed Pigs. Genome Announc.
December
2014.
Read more...
46.
Christiansen M. T., R. S. Kaas, R. R. Chaudhuri, M. A. Holmes, H. Hasman, F. M. Aarestrup.
Genome-wide high-throughput screening to investigate essential genes involved in
methicillin-resistant Staphylococcus aureus Sequence Type 398 survival. PLoS One. 9:e89018.
February
2014.
Read more...
45.
Carattoli A, E. Zankari, A. Garcìa-Fernandez, M. Volby Larsen, O. Lund, L. Villa, F.M.
Aarestrup, H.
Hasman. In silico detection and typing of plasmids using PlasmidFinder and plasmid multilocus
sequence typing. Antimicrob Agents Chemother. 58:3895-903. July 2014.
Read more...
44.
Abdelbary M. M., A. Wittenberg, C. Cuny, F. Layer, K. Kurt, L. H. Wieler, B. Walther, R. Skov,
J.
Larsen, H. Hasman, J. R. Fitzgerald, T. C. Smith, J. A. Wagenaar, A. Pantosti, M. Hallin, M. J.
Struelens, G. Edwards, R. Böse, U. Nübel, W. Witte. Phylogenetic analysis of Staphylococcus
aureus
CC398 reveals a sub-lineage epidemiologically associated with infections in horses. 2014. PLoS
One.
9:e88083.
Read more...
43.
Kaas RS, Leekitcharoenphon P, Aarestrup FM, Lund O. Solving the problem of comparing whole
bacterial
genomes across different sequencing platforms. PLoS One. 2014 Aug 11;9(8):e104984. doi:
10.1371/journal.pone.0104984. eCollection
2014. PubMed PMID: 25110940; PubMed Central PMCID: PMC4128722.
Read more...
42.
Hendriksen RS, Leekitcharoenphon P, Lukjancenko O, Lukwesa-Musyani C,Tambatamba B, Mwaba J,
Kalonda
A, Nakazwe R, Kwenda G, Jensen JD, Svendsen CA,Dittmann KK, Kaas RS, Cavaco LM, Aarestrup FM,
Hasman
H, Mwansa JC. Genomic Signature of Multi-Drug Resistant Salmonella Typhi related to a Massive
Outbreak
in Zambia during 2010 - 2012. J Clin Microbiol. 2014 Nov 12. pii: JCM.02026-14
[Epub ahead of print].
Read more...
41.
Hendriksen RS, Leekitcharoenphon P, Mikoleit M, Jensen JD, Kaas RS, Roer L,Joshi HB,
Pornruangmong
S, Pulsrikarn C, Gonzalez-Aviles GD, Reuland EA, Nashwan AN, Wester AL, Aarestrup FM, Hasman H.
A
genomic dissection of travel associated SBL-producing Salmonella Typhi originating from the
Philippines - A one-off
occurrence or threat to the effective treatment of typhoid fever? J Clin, Microbiol. 2014 Nov
26.
pii: JCM.03104-14, Epub ahead of print.
Read
more...
40.
Joensen KG, Scheutz F, Lund O, Hasman H, Kaas RS, Nielsen EM, Aarestrup FM. Evaluation of
Real-Time
WGS for Routine Typing, Surveillance and Outbreak Detection of Verotoxigenic Escherichia coli.
Published: J Clin Microbiol. 2014 Feb 26. [Epub ahead of print].
Read more...
39.
Larsen MV, Cosentino S, Lukjancenko O, Saputra D, Rasmussen S, Hasman H, Sicheritz-Pontén T,
Aarestrup FM, Ussery DW, Lund O. Benchmarking of Methods for Genomic Taxonomy. Published: J Clin
Microbiol. 2014 Feb 26. [Epub ahead of print]. Read more...
38.
Kleinheinz KA, Joensen KG, Larsen MV. Applying the ResFinder and VirulenceFinder web-services
for
easy identification of acquired antibiotic resistance and E. coli virulence genes in
bacteriophage
and prophage nucleotide sequences. Published: Bacteriophage 2014 Jan 1;4(1):e27943. Epub 2014
Jan
22. Read more...
37.
Lukjancenko O, Ussery DW. Vibrio chromosome-specific families. Published: Front. Microbiol., 18
March 2014 | doi: 10.3389/fmicb.2014.00073. Read
more...
36.
Leekitcharoenphon P, Nielsen EM, Kaas RS, Lund O, Aarestrup FM. Evaluation of Whole Genome
Sequencing for Outbreak Detection of Salmonella enterica. Published: February 04, 2014, DOI:
10.1371/journal.pone.0087991. Read
more...
35.
Cosentino S, Voldby Larsen M, Møller Aarestrup F, Lund O. PathogenFinder - Distinguishing Friend
from Foe Using Bacterial Whole Genome Sequence Data. PLoS One. 2013 Oct 28;8(10):e77302. doi:
10.1371/journal.pone.0077302. PubMed PMID: 24204795; PubMed Central PMCID: PMC3810466.
Read more...
34.
Gautier L, Lund O. Low-bandwidth and non-compute intensive remote identification of microbes
from
raw sequencing reads. PLoS One. 2013 Dec 31;8(12):e83784. doi: 10.1371/journal.pone.0083784.
PubMed
PMID: 24391826; PubMed Central PMCID: PMC3877093.
Read more...
33.
Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM.
Rapid
whole genome sequencing for the detection and characterization of microorganisms directly from
clinical samples. J Clin Microbiol. 2013 Oct 30. Epub ahead of print.
Read more...
32.
Domingues AR, Vieira AR, Hendriksen RS, Pulsrikarn C, Aarestrup FM. Spatio-temporal analysis of
Salmonella surveillance data in Thailand. Epidemiol Infect. 2013 Oct 9:1-11. Epub ahead of
print.
Read more...
31.
Pimlapas Leekitcharoenphon, Carsten Friis, Ea Zankari, Christina Aaby Svendsen, Lance B. Price,
Maral Rahmani, Ana Herrero-Fresno, Kayode Fashae, Olivier Vandenberg, Frank M. Aarestrup, Rene
S.
Hendriksen.Genomics of an emerging clone of Salmonella serovar Typhimurium ST313 from Nigeria
and
the Democratic Republic of Congo. J Infect Dev Ctries 2013. Read more...
30.
Leon Eyrich Jessen, Ilka Hoof, Ole Lund, Morten Nielsen. SigniSite: Identification of
residue-level
genotype-phenotype correlations in protein multiple sequence alignments. Nucleic Acids Research,
Volume 41, Issue W1, 2013. Read
more...
29.
Larsen, MV. Internet-Based Solutions for Analysis of Next-Generation Sequence Data. J. Clin.
Microbiol, 2013.
Read
more...
28.
Leekitcharoenphon P, Kaas RS, Thomsen MC, Friis C, Rasmussen S, Aarestrup FM. snpTree--a
web-server
to identify and construct SNP trees from whole genome sequence data. BMC Genomics. 2012:13 Suppl
7:S6.
Read more...
26.
Zankari E, Hasman H, Kaas RS, Seyfarth AM, Agersø Y, Lund O, Larsen MV, Aarestrup FM. Genotyping
using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic
antimicrobial susceptibility testing. J Antimicrob Chemother. 2012 Dec
Read more...
25.
Kaas RS, Friis C, Ussery DW, Aarestrup FM. Estimating variation within the genes and inferring
the
phylogeny of 186 sequenced diverse Escherichia coli genomes. BMC Genomics. 2012 Oct
31;13(1):577E-published ahead of print.
Read
more...
24.
Frank M. Aarestrup, Eric W. Brown, Chris Detter, Peter Gerner-Smidt, Matthew W. Gilmour, Dag
Harmsen, Rene S. Hendriksen, Roger Hewson, David L. Heymann, Karin Johansson, Kashef Ijaz, Paul
S.
Keim, Marion Koopmans, Annelies Kroneman, Danilo Lo Fo Wong, Ole Lund, Daniel Palm, Pathom
Sawanpanyalert, Jeremy Sobel, and Jørgen Schlundt. Integrating Genome-based Informatics to
Modernize
Global Disease Monitoring, Information Sharing, and Response. E-published ahead of print. Read more...
23.
Zankari E, Hasman H, Cosentine S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV.
Identification of acquired antimicrobial resistance genes. J. Antimicrob. Chemother. (2012) doi:
10.1093/jac/dks261. 2012, June.
Read more...
22.
Kröger C, Dillon S, Cameron A, Papenfort K, Sivasankaran SK, Hokamp K, Chao Y, Sittka A, Hébrard
M,
Händler K, Colgan A, Leekitcharoenphon P, Langridge G, Lohan AJ, Loftus B, Lucchini S, Ussery
DW,
Dorman CJ, Thomson NR, Vogel J, Hintonc JCD. The transcriptional landscape and small RNAs of
Salmonella enterica serovar Typhimurium. PNAS. 2012, May 29.
Read more...
21.
Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW. Genomic variation in
Salmonella enterica core genes for epidemiological typing. BMC Genomics. 2012 Mar12;13(1):88.
Read more...
20.
Price LB, Stegger M, Hasman H, Aziz M, Larsen J, Andersen PS, Pearson T, Waters AE, Foster JT,
Schupp J, Gillece J, Driebe E, Liu CM, Springer B, Zdovc I, Battisti A, Franco A, Zmudzki J,
Schwarz
S, Butaye P, Jouy E, Pomba C, Porrero MC, Ruimy R, Smith TC, Robinson DA, Weese JS, Arriola CS,
Yu
F, Laurent F, Keim P, Skov R, Aarestrup FM. Staphylococcus aureus CC398. Host Adaptation and
Emergence of Methicillin Resistance in Livestock. MBio. 2012 Feb 21;3(1).
Read more...
19.
Karlsson FH, Ussery DW, Nielsen J, Nookaew I. "A closer look at bacteroides: phylogenetic
relationship and genomic implications of a life in the human gut.", Microb Ecol. 61:473-485
(2011(2011).
Read more...
18.
Brede DA, Snipen LG, Ussery DW, Nederbragt AJ, Nes IF. "Complete genome sequence of the
commensal
Enterococcus faecalis 62, isolated from a healthy Norwegian infant.", J Bacteriol. 2011
May;193(9):2377-8.
(2011).
Read more...
17.
Field D, Amaral-Zettler L, Cochrane G, Cole JR, Dawyndt P, Garrity GM, Gilbert J, Glöckner FO,
Hirschman L, Karsch-Mizrachi I, Klenk HP, Knight R, Kottmann R, Kyrpides N, Meyer F, San Gil I,
Sansone SA, Schriml LM, Sterk P, Tatusova T, Ussery DW, White O, Wooley J.
The Genomic Standards Consortium. PLoS Biology, 9:(6) e1001088, (2011).
Read more...
16.
Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert T, Ussery DW, and Knøchel S. Genome Sequence
of
Campylobacter jejuni strain 327, a strain isolated from a turkey slaughterhouse.Stand Genomic
Sci.
2011 Apr 29;4(2):113-22. Epub 2011 Apr 25
Read more...
15.
Takamiya M, Ozen A, Rasmussen M, Alter T, Gilbert T, Ussery DW, and Knøchel S. Genome sequences
of
two stress-tolerant Campylobacter jejuni poultry strains, 305 and DFVF1099. J. Bacteriol.
193:5546-5547, (2011).
Read more...
14.
Larsen MV, Cosentino S, Rasmussen S, Friis C, Hasman H, Marvig RL, Jelsbak L, Pontén TS, Ussery
DW,
Aarestrup FM, Lund O. Multilocus Sequence Typing of Total Genome Sequenced Bacteria. J Clin
Microbiol. 2012 Jan 11.
Read more...
13.
Lukjancenko O, Ussery DW, Wassenaar TM. Comparative Genomics of Bifidobacterium, Lactobacillus
and
Related Probiotic Genera. Microb Ecol. 2011 October
Read more...
12.
Keim PS, Aarestrup FM, Shakya G, Price LB, Hendriksen RS, Engelthaler DM, Pearson T. Reply to
"South
Asia instead of Nepal may be the origin of the Haitian cholera outbreak strain". MBio. 2011
November
Read more...
11.
Concepción Porrero M, Hasman H, Vela AI, Fernández-Garayzábal JF, Domínguez L, Aarestrup FM.
Clonal
diversity of Staphylococcus aureus originating from the small ruminants goats and sheep. Vet
Microbiol. 2011 October
Read more...
10.
Hendriksen RS, Le Hello S, Bortolaia V, Pulsrikarn C, Nielsen EM, Pornruangwong S, Chaichana P,
Svendsen CA, Weill FX, Aarestrup FM. Characterization of Salmonella enterica serovar Stanley
isolates; a serovar endemic to Asia and associated with travel. J Clin Microbiol. 2011 December
Read more...
9.
Hendriksen RS, Price LB, Schupp JM. Population Genetics of Vibrio cholerae from Nepal in 2010:
Evidence on the Origin of the Haitian Outbreak. mBio, 2011 August
. Read more...
8.
Ozen Al, Ussery DW,. Defining the Pseudomonas Genus: Where Do We Draw the Line with
Azotobacter?.
Microbial Ecology, 2011 August
. Read more...
7.
Cao X, Cavaco LM, Lv Y, Li Y, Zheng B, Wang P, Hasman H, Liu Y, Aarestrup FM. Molecular
Characterization and Antimicrobial Susceptibility Testing of Escherichia coli Isolates from
Patients
with Urinary Tract Infections in 20
Chinese Hospitals. J Clin Microbiol. 2011 Jul;49(7):2496-501.
Read more...
6.
Jacobsen A, Hendriksen RS, Aaresturp FM, Ussery DW, Friis C. The Salmonella enterica Pan-genome.
Microbial Ecology, 2011 Jun 4.
Read
more...
5.
Lukjancenko O, Wassenaar TM, Ussery DW. Comparison of 61 Sequenced Escherichia coli Genomes.
Microbial Ecology, 60:708-720, (2010). Read more...
3.
Lukjancenko O, Ussery DW. Design of an Enterobacteriaceae Pan-genome Microarray Chip. CSBio
2010.
Proceedings. CCIS , 115: 174-189.
2.
Qureshi M, Rotenberg E, Stærfeldt HH, Hansson L, Ussery D. The Genome Atlas Resource. CSBio
2010.
Proceedings. CCIS, 115:149-158.
1.
Andreatta M, Nielsen M, Møller Aarestrup F, Lund O. In Silico
Prediction of Human Pathogenicity in the gamma-Proteobacteria. PLoS One.
2010 Oct.
Read more...